Variant report

Variant	rs1874929
Chromosome Location	chr5:95684541-95684542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95679934..95682177-chr5:95683139..95686030,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10037912	0.86[EUR][1000 genomes]
rs10476546	0.86[CEU][hapmap];0.85[CHB][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs10476664	0.81[EUR][1000 genomes]
rs11135450	0.86[CEU][hapmap];0.85[CHB][hapmap];0.86[EUR][1000 genomes]
rs11135457	0.86[CEU][hapmap]
rs11741888	0.86[CEU][hapmap]
rs11743265	0.86[CEU][hapmap]
rs12517140	0.81[EUR][1000 genomes]
rs1353797	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs155971	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs155994	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs155995	0.86[CEU][hapmap];0.80[JPT][hapmap]
rs156019	0.87[CEU][hapmap];0.81[JPT][hapmap];0.80[TSI][hapmap]
rs156021	0.86[CEU][hapmap]
rs271919	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs271921	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs271923	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs271927	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs271937	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs271939	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs271947	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2936428	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3792744	0.86[CEU][hapmap]
rs3811942	0.86[CEU][hapmap]
rs3922468	0.89[EUR][1000 genomes]
rs436321	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs456709	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs4869284	0.91[CEU][hapmap]
rs6875585	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1874929	TTC37	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95672200-95687400	Enhancers	Hela-S3	cervix
2	chr5:95674800-95686400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:95680400-95686200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:95681000-95685400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:95681200-95685800	Weak transcription	HepG2	liver
6	chr5:95683000-95684600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:95683000-95684600	Enhancers	HUVEC	blood vessel
8	chr5:95684000-95685400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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