Variant report

Variant	rs1561632
Chromosome Location	chr5:16256799-16256800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10056479	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10075110	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10079067	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2402099	1.00[JPT][hapmap]
rs2402235	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2402237	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2582662	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4565210	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4701652	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4701653	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4702129	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4702130	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6866941	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6892135	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7715586	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7715720	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs995764	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1561632	MARCH11	cis	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16254200-16257200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links