Variant report

Variant	rs2402099
Chromosome Location	chr5:16195720-16195721
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10056479	0.86[ASN][1000 genomes]
rs10075110	0.87[ASN][1000 genomes]
rs10079067	0.87[ASN][1000 genomes]
rs168211	0.95[ASN][1000 genomes]
rs186951	1.00[CHB][hapmap]
rs2402235	0.87[ASN][1000 genomes]
rs2402237	0.83[ASN][1000 genomes]
rs4565210	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4701652	0.87[ASN][1000 genomes]
rs4701653	0.87[ASN][1000 genomes]
rs4702129	0.87[ASN][1000 genomes]
rs4702130	0.87[ASN][1000 genomes]
rs6866941	0.87[ASN][1000 genomes]
rs6892135	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7715720	0.81[ASN][1000 genomes]
rs995764	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830217	chr5:16004704-16225229	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1015738	chr5:16190125-16233136	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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