Variant report

Variant	rs1562412
Chromosome Location	chr11:119698496-119698497
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10750166	0.86[ASN][1000 genomes]
rs10790348	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11607839	0.88[ASN][1000 genomes]
rs1562411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4267085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4271389	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4328220	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6589778	0.97[ASN][1000 genomes]
rs7926623	0.86[ASN][1000 genomes]
rs7945067	0.82[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119688200-119702800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:119697600-119698600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr11:119697600-119698600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:119697600-119699000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr11:119698000-119698600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:119698000-119698600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:119698000-119699000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:119698200-119698800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr11:119698200-119702800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:119698200-119703000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:119698400-119699400	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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