Variant report

Variant	rs7945067
Chromosome Location	chr11:119678445-119678446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10750166	0.96[ASN][1000 genomes]
rs10790348	0.86[ASN][1000 genomes]
rs11607839	0.87[ASN][1000 genomes]
rs1562411	0.82[ASN][1000 genomes]
rs1562412	0.82[ASN][1000 genomes]
rs4267085	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs4271389	0.86[ASN][1000 genomes]
rs4328220	0.85[ASN][1000 genomes]
rs6589778	0.86[ASN][1000 genomes]
rs7926586	0.85[EUR][1000 genomes]
rs7926623	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7945067	C1QTNF5	cis	parietal	SCAN
rs7945067	ZAK	trans	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119672400-119678600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:119677800-119682400	Weak transcription	Fetal Intestine Large	intestine
3	chr11:119677800-119683800	Weak transcription	Right Ventricle	heart
4	chr11:119678200-119680800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:119678400-119678600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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