Variant report

Variant	rs1562694
Chromosome Location	chr14:85684590-85684591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1449418	0.98[ASN][1000 genomes]
rs1449419	0.98[ASN][1000 genomes]
rs1449420	0.99[ASN][1000 genomes]
rs1550584	0.96[ASN][1000 genomes]
rs1623642	0.90[ASN][1000 genomes]
rs1667517	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1667519	0.99[ASN][1000 genomes]
rs1667520	0.85[ASN][1000 genomes]
rs1767392	0.81[EUR][1000 genomes]
rs1767401	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1767402	0.86[ASN][1000 genomes]
rs1767403	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1767405	0.94[ASN][1000 genomes]
rs2478802	0.82[EUR][1000 genomes]
rs2584595	0.96[ASN][1000 genomes]
rs2767538	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56749278	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs964515	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964516	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1048026	chr14:85330544-85686322	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3401331	chr14:85332747-85716351	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv832846	chr14:85517736-85715650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3402941	chr14:85684466-85685041	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85681600-85688800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:85683000-85684800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr14:85683600-85684600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr14:85683800-85684600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr14:85684000-85684600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr14:85684000-85684800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr14:85684200-85686000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:85684200-85690000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:85684400-85687800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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