Variant report

Variant	rs1623642
Chromosome Location	chr14:85688271-85688272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1449418	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1449419	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1449420	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1550584	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1562694	0.90[ASN][1000 genomes]
rs1667517	0.98[ASN][1000 genomes]
rs1667519	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1667520	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1767401	0.96[ASN][1000 genomes]
rs1767402	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1767403	0.90[ASN][1000 genomes]
rs1767405	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1767406	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2584595	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2767538	0.98[ASN][1000 genomes]
rs56749278	0.95[ASN][1000 genomes]
rs964515	0.90[ASN][1000 genomes]
rs964516	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3401331	chr14:85332747-85716351	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832846	chr14:85517736-85715650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85681600-85688800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:85684200-85690000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:85684600-85689800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:85687200-85688600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr14:85687200-85690800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr14:85687800-85690800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr14:85687800-85691000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr14:85688000-85688400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr14:85688000-85689000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr14:85688000-85691000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr14:85688000-85691200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:85688200-85689400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr14:85688200-85690800	Enhancers	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links