Variant report

Variant	rs1563082
Chromosome Location	chr8:95999543-95999544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:95960526..95962199-chr8:95996722..96000090,3	MCF-7	breast:
2	chr8:95998963..96001168-chr8:96001657..96004016,2	MCF-7	breast:
3	chr8:95999262..96000977-chr8:96027577..96029691,2	K562	blood:
4	chr8:95985327..95987804-chr8:95999434..96002378,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-INTS8-5	chr8:95998543-96000422	NONHSAT127814

Variant related genes	Relation type
ENSG00000164938	Chromatin interaction
ENSG00000253528	Chromatin interaction
ENSG00000156170	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10098888	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10112501	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1574312	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1962466	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2459966	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2678821	0.82[CEU][hapmap]
rs28456359	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55865568	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62523084	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62523085	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62523111	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv508520	chr8:95939373-96140068	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95964400-96002200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:95964800-95999600	Weak transcription	Brain Hippocampus Middle	brain
3	chr8:95964800-95999600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr8:95965000-95999600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr8:95970600-96000800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:95971600-96000400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:95974400-96002000	Weak transcription	Esophagus	oesophagus
8	chr8:95977400-96024200	Weak transcription	Aorta	Aorta
9	chr8:95977600-96008800	Weak transcription	Brain Germinal Matrix	brain
10	chr8:95980800-95999600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr8:95980800-96000200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:95980800-96000200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr8:95981000-96000200	Weak transcription	NHLF	lung
14	chr8:95981000-96003000	Weak transcription	Fetal Lung	lung
15	chr8:95981800-95999600	Weak transcription	Spleen	Spleen
16	chr8:95983800-96003600	Weak transcription	Pancreas	Pancrea
17	chr8:95984600-96000200	Weak transcription	HepG2	liver
18	chr8:95987000-96019600	Weak transcription	Lung	lung
19	chr8:95987200-96003000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr8:95987200-96018800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:95988000-95999600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr8:95988000-95999600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr8:95988000-96002400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr8:95988000-96004800	Weak transcription	HMEC	breast
25	chr8:95990000-95999600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr8:95990200-96002200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr8:95992800-96002400	Weak transcription	Psoas Muscle	Psoas
28	chr8:95992800-96002800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr8:95992800-96003000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr8:95993600-95999600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr8:95993600-95999800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr8:95993600-96000200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr8:95993600-96002200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr8:95993800-95999600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr8:95993800-95999600	Weak transcription	Liver	Liver
36	chr8:95993800-95999800	Weak transcription	A549	lung
37	chr8:95993800-96009200	Weak transcription	Primary T cells from cord blood	blood
38	chr8:95995200-96000200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr8:95995400-95999800	Weak transcription	Brain Anterior Caudate	brain
40	chr8:95996200-95999600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr8:95996400-95999800	Weak transcription	HUVEC	blood vessel
42	chr8:95997200-96002400	Weak transcription	Dnd41	blood
43	chr8:95997400-96018000	Weak transcription	HSMMtube	muscle
44	chr8:95997600-96000000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr8:95997600-96000400	Weak transcription	Stomach Mucosa	stomach
46	chr8:95997600-96004200	Weak transcription	Fetal Intestine Small	intestine
47	chr8:95997600-96009000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr8:95997600-96009200	Weak transcription	Thymus	Thymus
49	chr8:95997800-95999600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr8:95997800-95999800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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