Variant report

Variant	rs1962466
Chromosome Location	chr8:96018513-96018514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:96017089..96018665-chr8:96022753..96024345,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10098888	0.97[EUR][1000 genomes]
rs10112501	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1563082	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1574312	0.97[EUR][1000 genomes]
rs2459966	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2678821	0.82[AMR][1000 genomes]
rs28456359	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55865568	0.97[EUR][1000 genomes]
rs62523084	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62523085	0.97[EUR][1000 genomes]
rs62523111	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv508520	chr8:95939373-96140068	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv524876	chr8:96000919-96027306	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95977400-96024200	Weak transcription	Aorta	Aorta
2	chr8:95987000-96019600	Weak transcription	Lung	lung
3	chr8:95987200-96018800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:96001200-96023400	Weak transcription	Liver	Liver
5	chr8:96003200-96032600	Weak transcription	Gastric	stomach
6	chr8:96009000-96036400	Weak transcription	Spleen	Spleen
7	chr8:96009800-96023000	Weak transcription	Adipose Nuclei	Adipose
8	chr8:96012200-96018800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr8:96014600-96021600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:96015200-96019000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr8:96015600-96020400	Enhancers	HepG2	liver
12	chr8:96015600-96021600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:96016000-96021600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr8:96016200-96021600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr8:96016400-96021400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr8:96016400-96021600	Weak transcription	Brain Germinal Matrix	brain
17	chr8:96018000-96018600	Enhancers	A549	lung
18	chr8:96018000-96019200	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr8:96018200-96018600	Weak transcription	Stomach Mucosa	stomach
20	chr8:96018200-96018800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr8:96018200-96020200	Enhancers	Pancreas	Pancrea
22	chr8:96018400-96023000	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links