Variant report

Variant	rs1564133
Chromosome Location	chr4:22474535-22474536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:22466142..22467676-chr4:22473054..22475391,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10516410	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16872695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872716	1.00[ASN][1000 genomes]
rs16872734	1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872745	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs35762546	0.82[ASN][1000 genomes]
rs60834951	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61792019	0.82[ASN][1000 genomes]
rs61792022	0.82[ASN][1000 genomes]
rs61792028	0.91[ASN][1000 genomes]
rs61792031	0.91[ASN][1000 genomes]
rs61792036	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61792037	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61792038	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61792039	1.00[ASN][1000 genomes]
rs61793362	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61793364	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs717674	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73245201	0.82[ASN][1000 genomes]
rs73245202	0.91[ASN][1000 genomes]
rs7664692	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7671918	0.82[ASN][1000 genomes]
rs7679108	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv878752	chr4:22414023-22501043	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22419200-22476200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:22420600-22488000	Weak transcription	Aorta	Aorta
3	chr4:22433800-22479200	Weak transcription	Brain Hippocampus Middle	brain
4	chr4:22437400-22476400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:22443600-22476200	Weak transcription	A549	lung
6	chr4:22443800-22474600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:22447200-22475000	Weak transcription	NHLF	lung
8	chr4:22450400-22474800	Weak transcription	Adipose Nuclei	Adipose
9	chr4:22450400-22476000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:22450400-22484000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:22450400-22493200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:22456400-22476200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:22456800-22476000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:22456800-22479000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr4:22456800-22485000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:22462000-22493200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr4:22462400-22483600	Weak transcription	Liver	Liver
18	chr4:22462600-22476200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr4:22462600-22478400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr4:22465400-22476200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr4:22466400-22477600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr4:22466600-22484000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr4:22469200-22476200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr4:22469400-22475200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr4:22470000-22474800	Weak transcription	Right Atrium	heart
26	chr4:22471000-22475200	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr4:22471400-22475000	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr4:22472200-22474600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr4:22472200-22480200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr4:22472400-22474600	Genic enhancers	HepG2	liver
31	chr4:22472400-22475000	Enhancers	Left Ventricle	heart
32	chr4:22472400-22475200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr4:22472400-22476000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr4:22472600-22474800	Weak transcription	Lung	lung
35	chr4:22472600-22475000	Strong transcription	Primary T cells from cord blood	blood
36	chr4:22472600-22475000	Enhancers	Fetal Intestine Large	intestine
37	chr4:22472600-22476200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr4:22472600-22477200	Enhancers	HMEC	breast
39	chr4:22472600-22484200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr4:22472600-22484400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr4:22472600-22486200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr4:22472800-22477000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr4:22472800-22482400	Weak transcription	Ovary	ovary
44	chr4:22473000-22482400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr4:22473200-22475200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr4:22473200-22476000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr4:22473200-22487400	Weak transcription	Right Ventricle	heart
48	chr4:22473400-22474600	Enhancers	HSMMtube	muscle
49	chr4:22473400-22475200	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr4:22473400-22476200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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