Variant report

Variant	rs60834951
Chromosome Location	chr4:22485082-22485083
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1564133	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872695	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872700	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872711	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872716	1.00[ASN][1000 genomes]
rs16872734	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35762546	0.82[ASN][1000 genomes]
rs61792019	0.82[ASN][1000 genomes]
rs61792022	0.82[ASN][1000 genomes]
rs61792028	0.91[ASN][1000 genomes]
rs61792031	0.91[ASN][1000 genomes]
rs61792036	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61792037	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61792038	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61792039	1.00[ASN][1000 genomes]
rs61793362	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61793364	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73245201	0.82[ASN][1000 genomes]
rs73245202	0.91[ASN][1000 genomes]
rs7671918	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv878752	chr4:22414023-22501043	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22420600-22488000	Weak transcription	Aorta	Aorta
2	chr4:22450400-22493200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:22462000-22493200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:22472600-22486200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:22473200-22487400	Weak transcription	Right Ventricle	heart
6	chr4:22474200-22486200	Weak transcription	Fetal Stomach	stomach
7	chr4:22475000-22489400	Weak transcription	Lung	lung
8	chr4:22475200-22486000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:22476600-22485200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:22476600-22487200	Weak transcription	Small Intestine	intestine
11	chr4:22477800-22489000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr4:22480200-22485200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:22480400-22485400	Weak transcription	Fetal Intestine Small	intestine
14	chr4:22480400-22485600	Weak transcription	Primary T cells from cord blood	blood
15	chr4:22482200-22488800	Enhancers	HMEC	breast
16	chr4:22482400-22485400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:22482400-22485600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr4:22482400-22486600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr4:22482800-22486200	Weak transcription	Ovary	ovary
20	chr4:22483000-22487400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr4:22483000-22488400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:22483400-22488200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:22483800-22486400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr4:22484000-22485600	Enhancers	Fetal Heart	heart
25	chr4:22484000-22486400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr4:22484000-22488400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr4:22484000-22488600	Enhancers	Primary hematopoietic stem cells	blood
28	chr4:22484200-22485400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:22484200-22485600	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr4:22484200-22485600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:22484200-22485600	Enhancers	Liver	Liver
32	chr4:22484200-22485600	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr4:22484200-22485800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr4:22484200-22486400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr4:22484200-22487200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr4:22484200-22487200	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr4:22484200-22487200	Enhancers	HSMM	muscle
38	chr4:22484200-22488800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr4:22484200-22488800	Enhancers	NH-A	brain
40	chr4:22484200-22489400	Enhancers	HSMMtube	muscle
41	chr4:22484200-22490400	Enhancers	Fetal Muscle Leg	muscle
42	chr4:22484400-22485200	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr4:22484400-22485600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr4:22484400-22486600	Enhancers	NHLF	lung
45	chr4:22484400-22486600	Enhancers	Osteobl	bone
46	chr4:22484400-22489000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr4:22484600-22485200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr4:22484600-22485400	Enhancers	HepG2	liver
49	chr4:22484600-22485600	Enhancers	Hela-S3	cervix
50	chr4:22484600-22486600	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links