Variant report

Variant	rs1564501
Chromosome Location	chr6:37187806-37187807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1150788	0.82[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs1150789	0.80[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs1224330	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1976009	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs386305	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1564501	ITPR3	cis	cerebellum	SCAN
rs1564501	ANKS1A	cis	cerebellum	SCAN
rs1564501	KCTD20	cis	cerebellum	SCAN
rs1564501	SPDEF	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37176200-37189800	Weak transcription	Thymus	Thymus
2	chr6:37184600-37189600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:37184800-37189800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:37185400-37189600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:37185800-37189600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:37186200-37189600	Weak transcription	A549	lung
7	chr6:37186400-37189400	Weak transcription	Primary B cells from cord blood	blood
8	chr6:37186800-37189400	Weak transcription	Fetal Thymus	thymus
9	chr6:37187000-37188000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:37187000-37188800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr6:37187000-37189400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:37187000-37189400	Weak transcription	Dnd41	blood
13	chr6:37187000-37189400	Weak transcription	K562	blood
14	chr6:37187000-37189600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:37187200-37189400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:37187800-37189400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:37187800-37189800	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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