Variant report

Variant	rs1150788
Chromosome Location	chr6:37178786-37178787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36986055..36987477-chr6:37177799..37178902,22	MCF-7	breast:
2	chr6:36985644..36987482-chr6:37177455..37178899,11	MCF-7	breast:
3	chr6:36984139..36992310-chr6:37174438..37180666,13	K562	blood:
4	chr6:37176912..37179882-chr6:37181319..37183621,3	K562	blood:
5	chr6:37177179..37179979-chr6:37232016..37233735,2	K562	blood:
6	chr6:37137029..37138743-chr6:37176184..37178998,2	K562	blood:
7	chr6:37176193..37179030-chr6:37187098..37189200,2	K562	blood:
8	chr6:37018986..37019867-chr6:37177959..37178857,6	MCF-7	breast:
9	chr6:36985027..36989561-chr6:37176409..37180028,4	K562	blood:
10	chr6:36985713..36987315-chr6:37177177..37178923,41	K562	blood:
11	chr6:36996711..36997700-chr6:37177886..37178877,18	K562	blood:
12	chr6:36989705..36991355-chr6:37177906..37180017,2	K562	blood:
13	chr6:36989160..36990097-chr6:37177684..37178889,6	MCF-7	breast:
14	chr6:37001172..37003656-chr6:37177575..37179330,2	K562	blood:
15	chr6:37139248..37140979-chr6:37178268..37180778,2	K562	blood:
16	chr6:36988553..36990129-chr6:37177906..37178828,15	K562	blood:
17	chr6:37149356..37151039-chr6:37177346..37179658,2	K562	blood:
18	chr6:37143067..37148225-chr6:37171800..37179920,10	K562	blood:
19	chr6:36989194..36990306-chr6:37177960..37178938,5	MCF-7	breast:
20	chr6:37136338..37142901-chr6:37174353..37180910,16	K562	blood:
21	chr6:36995372..37000472-chr6:37174362..37180086,7	K562	blood:
22	chr6:36989570..36992539-chr6:37178142..37179821,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction
ENSG00000146192	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1150789	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1224330	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1564501	0.82[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs1680005	0.84[CHD][hapmap];0.86[JPT][hapmap]
rs1757008	0.84[CEU][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap]
rs1757009	0.84[CEU][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap]
rs1757011	0.86[JPT][hapmap]
rs1757012	0.81[CEU][hapmap]
rs1766683	0.84[CEU][hapmap];0.86[JPT][hapmap]
rs1766684	0.82[AMR][1000 genomes]
rs1976009	0.80[ASN][1000 genomes]
rs2622890	0.95[CEU][hapmap];0.86[JPT][hapmap]
rs2788076	0.84[CEU][hapmap]
rs386305	0.82[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527191	chr6:37173793-37180523	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37167200-37179200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:37172000-37179000	Enhancers	Fetal Thymus	thymus
3	chr6:37173000-37179000	Enhancers	Primary T cells fromperipheralblood	blood
4	chr6:37173800-37178800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:37175200-37178800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:37176000-37182600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:37176200-37178800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:37176200-37179000	Enhancers	Dnd41	blood
9	chr6:37176200-37179800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:37176200-37180000	Enhancers	K562	blood
11	chr6:37176200-37189800	Weak transcription	Thymus	Thymus
12	chr6:37177800-37178800	Enhancers	Colon Smooth Muscle	Colon
13	chr6:37178000-37178800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:37178000-37178800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:37178000-37178800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr6:37178000-37178800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:37178000-37178800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr6:37178000-37178800	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr6:37178000-37178800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:37178000-37178800	Enhancers	Fetal Intestine Small	intestine
21	chr6:37178000-37178800	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr6:37178000-37179000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:37178200-37178800	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr6:37178200-37178800	Enhancers	HSMMtube	muscle
25	chr6:37178200-37179000	Bivalent Enhancer	HepG2	liver
26	chr6:37178200-37184200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:37178400-37180000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:37178600-37180800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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