Variant report

Variant	rs1757012
Chromosome Location	chr6:37175895-37175896
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36997224..37001862-chr6:37173680..37176936,6	K562	blood:
2	chr6:36984139..36992310-chr6:37174438..37180666,13	K562	blood:
3	chr6:37145223..37146087-chr6:37175760..37176311,2	K562	blood:
4	chr6:37142590..37145563-chr6:37170274..37176000,5	K562	blood:
5	chr6:37136875..37138408-chr6:37173630..37176178,2	K562	blood:
6	chr6:37138941..37142490-chr6:37173522..37176911,4	K562	blood:
7	chr6:37018979..37019899-chr6:37175550..37176433,4	K562	blood:
8	chr6:37156818..37161104-chr6:37172850..37175996,3	K562	blood:
9	chr6:36989137..36990101-chr6:37175465..37176865,5	MCF-7	breast:
10	chr6:36985701..36987115-chr6:37175477..37176997,13	K562	blood:
11	chr6:37047930..37050667-chr6:37174268..37176319,2	K562	blood:
12	chr6:36989137..36990111-chr6:37175487..37176467,5	K562	blood:
13	chr6:36996603..36998184-chr6:37175452..37176492,5	K562	blood:
14	chr6:37015294..37018707-chr6:37173927..37177925,4	K562	blood:
15	chr6:36985689..36987067-chr6:37174835..37176439,10	MCF-7	breast:
16	chr6:37138215..37139821-chr6:37175496..37177561,2	MCF-7	breast:
17	chr6:37019209..37019948-chr6:37175488..37176263,3	MCF-7	breast:
18	chr6:37143067..37148225-chr6:37171800..37179920,10	K562	blood:
19	chr6:37019030..37019973-chr6:37175557..37176474,5	MCF-7	breast:
20	chr6:37136338..37142901-chr6:37174353..37180910,16	K562	blood:
21	chr6:36995372..37000472-chr6:37174362..37180086,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000146192	Chromatin interaction
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1150788	0.81[CEU][hapmap]
rs1150789	0.85[CEU][hapmap]
rs1624598	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1757008	0.96[CEU][hapmap];0.82[CHB][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1757009	0.96[CEU][hapmap];0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1757010	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1766683	0.96[CEU][hapmap];0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1766684	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2622890	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2776795	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2776796	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2776798	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2788076	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2788077	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2842634	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4714044	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4714045	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527191	chr6:37173793-37180523	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37167200-37179200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:37169600-37176200	Enhancers	Primary hematopoietic stem cells	blood
3	chr6:37170000-37178000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:37170800-37178000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:37171000-37177400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:37172000-37179000	Enhancers	Fetal Thymus	thymus
7	chr6:37172400-37177800	Weak transcription	Fetal Heart	heart
8	chr6:37172400-37177800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:37173000-37178400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:37173000-37179000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr6:37173200-37176400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr6:37173600-37178000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:37173600-37178000	Weak transcription	Fetal Intestine Small	intestine
14	chr6:37173600-37178200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:37173600-37178200	Weak transcription	A549	lung
16	chr6:37173800-37176400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:37173800-37178800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:37174600-37177600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr6:37174600-37177600	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr6:37174600-37178400	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr6:37174800-37178400	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr6:37175000-37176200	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr6:37175000-37178600	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr6:37175200-37178600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:37175200-37178800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:37175400-37176000	Enhancers	HepG2	liver
27	chr6:37175400-37176200	Enhancers	Primary B cells from peripheral blood	blood
28	chr6:37175400-37176200	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr6:37175400-37178400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr6:37175400-37178600	Enhancers	Primary T cells from cord blood	blood
31	chr6:37175600-37176000	Enhancers	Primary B cells from cord blood	blood
32	chr6:37175600-37176000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
33	chr6:37175600-37176000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:37175600-37176000	Enhancers	Placenta	Placenta
35	chr6:37175600-37176000	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr6:37175600-37176000	Enhancers	GM12878-XiMat	blood
37	chr6:37175600-37176200	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr6:37175600-37176200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:37175600-37176200	Enhancers	Pancreas	Pancrea
40	chr6:37175600-37176200	Flanking Active TSS	Dnd41	blood
41	chr6:37175800-37176200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:37175800-37176200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:37175800-37176200	Enhancers	Duodenum Mucosa	Duodenum
44	chr6:37175800-37176200	Enhancers	Thymus	Thymus
45	chr6:37175800-37176200	Flanking Active TSS	K562	blood

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