Variant report

Variant	rs2788076
Chromosome Location	chr6:37170691-37170692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37142590..37145563-chr6:37170274..37176000,5	K562	blood:
2	chr6:36993719..36995482-chr6:37168035..37170817,2	K562	blood:
3	chr6:37137974..37142365-chr6:37169170..37171597,4	K562	blood:
4	chr6:36953404..36955776-chr6:37170589..37172526,2	MCF-7	breast:
5	chr6:37169595..37171540-chr6:37173349..37175303,2	K562	blood:
6	chr6:37159019..37162838-chr6:37167718..37170821,3	K562	blood:

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction
ENSG00000137409	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1150788	0.84[CEU][hapmap]
rs1150789	0.89[CEU][hapmap]
rs1624598	0.86[AMR][1000 genomes]
rs1757008	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1757009	1.00[CEU][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1757010	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1757012	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1766683	1.00[CEU][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1766684	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2622890	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2776795	0.87[AMR][1000 genomes]
rs2776796	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2776798	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2788077	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2842634	0.84[AMR][1000 genomes]
rs4714044	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4714045	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37167200-37179200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:37167400-37173400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:37167600-37173600	Enhancers	Fetal Intestine Small	intestine
4	chr6:37168000-37173800	Enhancers	HepG2	liver
5	chr6:37168600-37171800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:37168800-37171400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:37169000-37171600	Enhancers	Primary T cells fromperipheralblood	blood
8	chr6:37169200-37171600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr6:37169200-37172600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr6:37169200-37174000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr6:37169400-37171800	Enhancers	K562	blood
12	chr6:37169400-37173200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr6:37169400-37173400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:37169400-37173400	Enhancers	Duodenum Mucosa	Duodenum
15	chr6:37169400-37174200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr6:37169400-37174200	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr6:37169600-37171000	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr6:37169600-37171200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:37169600-37171400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr6:37169600-37171600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:37169600-37171800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:37169600-37172200	Enhancers	Primary T cells from cord blood	blood
23	chr6:37169600-37176200	Enhancers	Primary hematopoietic stem cells	blood
24	chr6:37169800-37171000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:37169800-37173800	Enhancers	Fetal Intestine Large	intestine
26	chr6:37170000-37171400	Weak transcription	Fetal Thymus	thymus
27	chr6:37170000-37172400	Enhancers	Stomach Mucosa	stomach
28	chr6:37170000-37173000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr6:37170000-37178000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:37170200-37172800	Enhancers	Dnd41	blood
31	chr6:37170400-37171000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:37170400-37171000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr6:37170400-37171000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:37170400-37171000	Enhancers	NHEK	skin
35	chr6:37170400-37171200	Weak transcription	Colonic Mucosa	Colon
36	chr6:37170400-37171200	Bivalent Enhancer	HUVEC	blood vessel
37	chr6:37170400-37171400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:37170600-37170800	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr6:37170600-37171000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr6:37170600-37173600	Enhancers	Hela-S3	cervix

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