Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10519835	0.90[CEU][hapmap]
rs1495285	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17817384	0.90[CEU][hapmap]
rs2437137	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2437138	0.81[ASN][1000 genomes]
rs2467557	0.81[ASN][1000 genomes]
rs2467558	0.81[ASN][1000 genomes]
rs2467559	0.87[GIH][hapmap];0.87[JPT][hapmap]
rs2467560	0.81[ASN][1000 genomes]
rs2467561	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs2467562	0.81[ASN][1000 genomes]
rs2467565	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs2879411	0.89[CEU][hapmap]
rs28844592	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28890479	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4447392	0.86[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58352226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs607247	0.81[JPT][hapmap]
rs608508	0.89[GIH][hapmap]
rs633138	0.81[JPT][hapmap]
rs636199	0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs645062	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs660403	0.89[GIH][hapmap]
rs8032205	0.81[ASN][1000 genomes]
rs8035302	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv431382	chr15:33873751-33915088	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753712	chr15:33894495-33914004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33858000-33921200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:33859200-33923200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr15:33873000-33923400	Weak transcription	Brain Anterior Caudate	brain
4	chr15:33890800-33897200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr15:33891800-33921800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:33892800-33904200	Weak transcription	Fetal Stomach	stomach
7	chr15:33893400-33897600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:33893800-33905200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:33893800-33911800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:33894600-33900400	Weak transcription	Psoas Muscle	Psoas
11	chr15:33895200-33897600	Strong transcription	Fetal Muscle Leg	muscle
12	chr15:33895600-33896800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:33895600-33922800	Weak transcription	Aorta	Aorta

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