Variant report

Variant	rs28890479
Chromosome Location	chr15:33887609-33887610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1495285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1565937	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2164248	0.81[AMR][1000 genomes]
rs2437137	0.81[ASN][1000 genomes]
rs2437138	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2467557	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2467558	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2467559	0.81[AMR][1000 genomes]
rs2467560	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2467561	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2467562	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2467565	0.81[ASN][1000 genomes]
rs28844592	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4447392	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58352226	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs607247	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs608508	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs631803	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs633138	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs636199	0.81[ASN][1000 genomes]
rs645062	0.81[ASN][1000 genomes]
rs660403	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs661281	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs675987	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs677466	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs683371	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs684678	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8032205	0.81[ASN][1000 genomes]
rs8035302	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv431382	chr15:33873751-33915088	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33858000-33921200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:33858600-33895200	Weak transcription	Fetal Muscle Leg	muscle
3	chr15:33859200-33923200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:33873000-33923400	Weak transcription	Brain Anterior Caudate	brain
5	chr15:33873800-33895200	Weak transcription	Aorta	Aorta
6	chr15:33879600-33892600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:33879600-33893200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:33883800-33893400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:33885200-33891600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:33886000-33887800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr15:33887200-33889200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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