Variant report

Variant	rs1566769
Chromosome Location	chr8:68393923-68393924
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68373775..68376507-chr8:68391723..68394936,3	MCF-7	breast:
2	chr8:68392165..68394251-chr8:68396716..68398399,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10957389	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11984622	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11994817	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12115004	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1393897	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16933341	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1812678	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1847292	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3824270	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4386963	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57070848	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57097218	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57185404	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57312956	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57438989	0.85[ASN][1000 genomes]
rs57714056	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57836294	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58637111	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59607772	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60606572	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61142861	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61220075	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61679446	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6415606	0.85[ASN][1000 genomes]
rs6472300	0.85[ASN][1000 genomes]
rs6472301	0.85[ASN][1000 genomes]
rs6472302	0.85[ASN][1000 genomes]
rs6472303	0.85[ASN][1000 genomes]
rs6472306	0.85[ASN][1000 genomes]
rs6472307	0.85[ASN][1000 genomes]
rs6472308	0.85[ASN][1000 genomes]
rs6472314	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6651314	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6992371	0.85[ASN][1000 genomes]
rs7005010	0.85[ASN][1000 genomes]
rs7018199	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73262624	0.85[ASN][1000 genomes]
rs73262636	0.85[ASN][1000 genomes]
rs73262638	0.85[ASN][1000 genomes]
rs73262648	0.85[ASN][1000 genomes]
rs73262665	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262669	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262675	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262680	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73262681	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262686	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262688	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262691	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73262695	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73262696	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73264707	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73264769	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73264774	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73264780	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73264784	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73264792	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73264794	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7815213	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824691	0.85[ASN][1000 genomes]
rs7839073	0.85[ASN][1000 genomes]
rs7842960	0.85[ASN][1000 genomes]
rs7844794	0.85[ASN][1000 genomes]
rs966593	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs966594	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68390600-68402400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr8:68392000-68394000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:68392000-68394200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:68392000-68394400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr8:68392200-68394200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:68393000-68394200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:68393000-68394600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:68393400-68394400	Enhancers	GM12878-XiMat	blood
9	chr8:68393400-68394600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:68393400-68394600	Enhancers	NHEK	skin
11	chr8:68393600-68394000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr8:68393600-68394200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr8:68393600-68394400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:68393600-68394400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:68393600-68394400	Enhancers	HMEC	breast
16	chr8:68393600-68394600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr8:68393600-68394600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr8:68393600-68394800	Enhancers	Fetal Heart	heart
19	chr8:68393600-68395000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:68393800-68394000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr8:68393800-68394200	Enhancers	NHDF-Ad	bronchial
22	chr8:68393800-68394600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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