Variant report

Variant	rs73262686
Chromosome Location	chr8:68401620-68401621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:68395910..68398286-chr8:68401570..68404368,2	MCF-7	breast:
2	chr8:68253740..68257766-chr8:68399442..68402595,4	MCF-7	breast:
3	chr8:68254537..68256412-chr8:68401208..68404099,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271966	Chromatin interaction
ENSG00000066777	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10957389	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11984622	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11994817	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12115004	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1393897	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1566769	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933341	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1812678	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1847292	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3824270	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4386963	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57070848	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57097218	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57185404	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57312956	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57438989	0.85[ASN][1000 genomes]
rs57714056	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57836294	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58637111	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59607772	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60606572	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61142861	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61220075	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61679446	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6415606	0.85[ASN][1000 genomes]
rs6472300	0.85[ASN][1000 genomes]
rs6472301	0.85[ASN][1000 genomes]
rs6472302	0.85[ASN][1000 genomes]
rs6472303	0.85[ASN][1000 genomes]
rs6472306	0.85[ASN][1000 genomes]
rs6472307	0.85[ASN][1000 genomes]
rs6472308	0.85[ASN][1000 genomes]
rs6472314	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6651314	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6992371	0.85[ASN][1000 genomes]
rs7005010	0.85[ASN][1000 genomes]
rs7018199	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73262624	0.85[ASN][1000 genomes]
rs73262636	0.85[ASN][1000 genomes]
rs73262638	0.85[ASN][1000 genomes]
rs73262648	0.85[ASN][1000 genomes]
rs73262665	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262669	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262675	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262680	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73262681	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262688	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262691	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73262695	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73262696	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73264707	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73264769	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73264774	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73264780	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73264784	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73264792	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73264794	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7815213	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824691	0.85[ASN][1000 genomes]
rs7839073	0.85[ASN][1000 genomes]
rs7842960	0.85[ASN][1000 genomes]
rs7844794	0.85[ASN][1000 genomes]
rs966593	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs966594	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68390600-68402400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr8:68394600-68401800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:68398200-68402000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr8:68398800-68403800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:68401600-68403000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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