Variant report

Variant	rs1568162
Chromosome Location	chr12:118084539-118084540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10850875	0.92[ASN][1000 genomes]
rs1976754	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118076600-118089000	Weak transcription	Pancreas	Pancrea
2	chr12:118083400-118085600	Enhancers	Fetal Brain Male	brain
3	chr12:118084000-118084600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr12:118084200-118084800	Enhancers	Brain Germinal Matrix	brain
5	chr12:118084200-118085000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr12:118084200-118085200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr12:118084200-118085400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr12:118084400-118084600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr12:118084400-118084600	Bivalent Enhancer	Brain Hippocampus Middle	brain
10	chr12:118084400-118085400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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