Variant report

Variant	rs1568338
Chromosome Location	chr3:140630057-140630058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140629695..140632657-chr3:140659330..140662384,3	MCF-7	breast:
2	chr3:140630037..140632900-chr3:140637525..140640287,2	K562	blood:

Variant related genes	Relation type
ENSG00000114120	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12486226	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12491336	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519191	0.95[EUR][1000 genomes]
rs1519192	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1519194	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56683057	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59222505	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60354869	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6769114	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6793318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72989087	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72989089	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72989090	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72989093	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72989095	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72989097	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72989101	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72991013	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72991014	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72991016	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72991017	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72991019	0.82[ASN][1000 genomes]
rs7624649	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7625667	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7628638	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7628654	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7650615	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591865	chr3:140396022-140728850	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1005522	chr3:140454632-140685915	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv536732	chr3:140454632-140685915	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140629800-140630600	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr3:140629800-140630800	Enhancers	Fetal Intestine Large	intestine
3	chr3:140629800-140631000	Enhancers	Fetal Kidney	kidney
4	chr3:140629800-140631400	Enhancers	Pancreas	Pancrea
5	chr3:140629800-140631600	Enhancers	HepG2	liver
6	chr3:140630000-140631000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:140630000-140631600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:140630000-140635400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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