Variant report
| Variant | rs72989087 |
|---|---|
| Chromosome Location | chr3:140624155-140624156 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000114120 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs12486226 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12491336 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1519191 | 0.95[EUR][1000 genomes] |
| rs1519192 | 0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1519194 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1568338 | 0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs56683057 | 0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs59222505 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs60354869 | 0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6769114 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6793318 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72989089 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs72989090 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs72989093 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs72989095 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72989097 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs72989101 | 0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs72991013 | 0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72991014 | 0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72991016 | 0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72991017 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7624649 | 0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7625667 | 0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7628638 | 0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7628654 | 0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7650615 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv591865 | chr3:140396022-140728850 | Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1005522 | chr3:140454632-140685915 | Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv536732 | chr3:140454632-140685915 | Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
