Variant report

Variant	rs1569654
Chromosome Location	chr6:132993115-132993116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1024178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962296	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1569652	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569653	0.95[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs17061571	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2064311	0.91[ASN][1000 genomes]
rs2064312	0.90[ASN][1000 genomes]
rs2267950	0.85[CHB][hapmap]
rs3798800	0.85[CHB][hapmap]
rs3798801	0.85[CHB][hapmap]
rs62425072	0.88[ASN][1000 genomes]
rs7747513	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765058	0.80[EUR][1000 genomes]
rs9373029	0.91[ASN][1000 genomes]
rs9375906	0.80[CHB][hapmap]
rs9389025	0.86[CHB][hapmap]
rs9399037	0.90[ASN][1000 genomes]
rs9402435	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132991000-132993200	Enhancers	Liver	Liver
2	chr6:132991000-132995200	Enhancers	Fetal Intestine Large	intestine
3	chr6:132991000-132995200	Enhancers	Fetal Intestine Small	intestine
4	chr6:132991200-132993200	Enhancers	Stomach Mucosa	stomach
5	chr6:132991400-132993400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:132991400-132993600	Weak transcription	Small Intestine	intestine
7	chr6:132991400-132997200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:132991600-132993600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:132991800-132993800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:132991800-132996400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:132991800-132997000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:132992000-132993800	Enhancers	HepG2	liver
13	chr6:132992000-132996200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:132992400-132996200	Weak transcription	Primary B cells from cord blood	blood
15	chr6:132992800-132993800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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