Variant report
| Variant | rs1570277 |
|---|---|
| Chromosome Location | chr6:165377627-165377628 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:165375696..165377875-chr6:165438259..165440436,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10806815 | 0.87[AFR][1000 genomes] |
| rs2146030 | 0.82[AFR][1000 genomes] |
| rs2181105 | 0.82[AFR][1000 genomes] |
| rs28700020 | 0.80[AFR][1000 genomes] |
| rs4385289 | 0.83[AFR][1000 genomes] |
| rs4416652 | 0.83[AFR][1000 genomes] |
| rs6903589 | 0.81[AFR][1000 genomes] |
| rs6906353 | 0.82[AFR][1000 genomes] |
| rs6914484 | 0.87[AFR][1000 genomes] |
| rs6918429 | 0.82[AFR][1000 genomes] |
| rs6919069 | 0.87[AFR][1000 genomes] |
| rs6919495 | 0.81[AFR][1000 genomes] |
| rs6920410 | 0.81[AFR][1000 genomes] |
| rs6929301 | 0.82[AFR][1000 genomes] |
| rs6935467 | 0.87[AFR][1000 genomes] |
| rs716143 | 0.82[AFR][1000 genomes] |
| rs9347043 | 0.82[AFR][1000 genomes] |
| rs9347945 | 0.82[AFR][1000 genomes] |
| rs9347947 | 0.87[AFR][1000 genomes] |
| rs9347948 | 0.87[AFR][1000 genomes] |
| rs9347949 | 0.87[AFR][1000 genomes] |
| rs9347962 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9356307 | 0.87[AFR][1000 genomes] |
| rs9356309 | 0.87[AFR][1000 genomes] |
| rs9356317 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9364779 | 0.83[AFR][1000 genomes] |
| rs9365819 | 0.81[AFR][1000 genomes] |
| rs9365820 | 0.82[AFR][1000 genomes] |
| rs9365827 | 0.87[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv605232 | chr6:164994771-165401154 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv886925 | chr6:165319631-165705488 | Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv886926 | chr6:165358270-165478051 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv886927 | chr6:165368163-165644276 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:165377400-165377800 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
