Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10806815	0.89[AFR][1000 genomes]
rs1570277	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2146030	0.84[AFR][1000 genomes]
rs2181105	0.84[AFR][1000 genomes]
rs28700020	0.82[AFR][1000 genomes]
rs35765053	0.81[AFR][1000 genomes]
rs4385289	0.84[AFR][1000 genomes]
rs4416652	0.84[AFR][1000 genomes]
rs6903589	0.82[AFR][1000 genomes]
rs6906353	0.84[AFR][1000 genomes]
rs6914484	0.89[AFR][1000 genomes]
rs6918429	0.84[AFR][1000 genomes]
rs6919069	0.89[AFR][1000 genomes]
rs6919495	0.83[AFR][1000 genomes]
rs6920410	0.83[AFR][1000 genomes]
rs6929301	0.84[AFR][1000 genomes]
rs6935467	0.89[AFR][1000 genomes]
rs716143	0.84[AFR][1000 genomes]
rs9347043	0.84[AFR][1000 genomes]
rs9347046	0.80[AFR][1000 genomes]
rs9347945	0.84[AFR][1000 genomes]
rs9347947	0.89[AFR][1000 genomes]
rs9347948	0.89[AFR][1000 genomes]
rs9347949	0.89[AFR][1000 genomes]
rs9347962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9356307	0.89[AFR][1000 genomes]
rs9356309	0.89[AFR][1000 genomes]
rs9364779	0.82[AFR][1000 genomes]
rs9365819	0.82[AFR][1000 genomes]
rs9365820	0.84[AFR][1000 genomes]
rs9365827	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv886926	chr6:165358270-165478051	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886927	chr6:165368163-165644276	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165374200-165375000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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