Variant report

Variant	rs1570846
Chromosome Location	chr10:44456480-44456481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs4948793	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60798435	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6593374	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6593376	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7099274	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7100261	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7894721	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7901081	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7904114	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7915624	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7919084	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44437600-44460800	Weak transcription	Gastric	stomach
2	chr10:44452400-44456600	Weak transcription	Right Atrium	heart
3	chr10:44453000-44460200	Enhancers	Ovary	ovary
4	chr10:44454600-44457200	Weak transcription	Spleen	Spleen
5	chr10:44455000-44457200	Weak transcription	Left Ventricle	heart
6	chr10:44455000-44460800	Weak transcription	Aorta	Aorta
7	chr10:44455400-44456600	Weak transcription	Fetal Kidney	kidney
8	chr10:44455600-44462000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr10:44455800-44460800	Weak transcription	Fetal Heart	heart
10	chr10:44456000-44457000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:44456200-44457200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:44456200-44457400	Weak transcription	Lung	lung
13	chr10:44456200-44458400	Enhancers	Fetal Muscle Leg	muscle
14	chr10:44456200-44459400	Weak transcription	Right Ventricle	heart
15	chr10:44456400-44456800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr10:44456400-44457800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:44456400-44459800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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