Variant report

Variant	rs7894721
Chromosome Location	chr10:44464507-44464508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1570846	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4948793	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60798435	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6593374	0.91[ASN][1000 genomes]
rs6593376	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7099274	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7100261	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7901081	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904114	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7915624	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7919084	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7894721	LOC338579	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44460200-44466000	Weak transcription	Right Ventricle	heart
2	chr10:44460200-44466800	Weak transcription	Spleen	Spleen
3	chr10:44461800-44464600	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:44461800-44469000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:44462000-44474400	Weak transcription	Left Ventricle	heart
6	chr10:44462400-44475200	Weak transcription	Right Atrium	heart
7	chr10:44463600-44467200	Weak transcription	Ovary	ovary
8	chr10:44464400-44465400	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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