Variant report

Variant	rs1571465
Chromosome Location	chr14:25565465-25565466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10146559	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12147239	0.87[JPT][hapmap]
rs12432850	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109537	0.84[CEU][hapmap]
rs17257773	0.86[JPT][hapmap]
rs1952503	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1958381	0.83[CEU][hapmap]
rs1958390	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1958391	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2031936	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2031938	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2031939	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4644786	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61979909	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61979910	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8006005	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020810	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs928075	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv901511	chr14:25505085-25588029	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3490801	chr14:25560793-25675699	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3490802	chr14:25560793-25675699	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25562600-25565600	Enhancers	Placenta Amnion	Placenta Amnion
2	chr14:25563600-25565800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:25563800-25565800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:25564200-25565800	Enhancers	Primary hematopoietic stem cells	blood
5	chr14:25564600-25565800	Enhancers	Fetal Intestine Large	intestine
6	chr14:25564600-25565800	Enhancers	Fetal Intestine Small	intestine
7	chr14:25564600-25566000	Enhancers	Fetal Lung	lung
8	chr14:25565000-25565600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:25565000-25565600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr14:25565000-25565600	Enhancers	Placenta	Placenta
11	chr14:25565000-25565600	Enhancers	Left Ventricle	heart
12	chr14:25565000-25565600	Enhancers	Stomach Mucosa	stomach
13	chr14:25565000-25565800	Enhancers	Colonic Mucosa	Colon
14	chr14:25565000-25565800	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr14:25565200-25565600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:25565200-25565600	Enhancers	Esophagus	oesophagus
17	chr14:25565200-25565600	Enhancers	Fetal Muscle Leg	muscle
18	chr14:25565200-25565600	Enhancers	Gastric	stomach
19	chr14:25565400-25565600	Enhancers	Pancreas	Pancrea
20	chr14:25565400-25565800	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr14:25565400-25567200	Weak transcription	Right Ventricle	heart

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