Variant report
| Variant | rs1572180 |
|---|---|
| Chromosome Location | chr13:89224484-89224485 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs12583174 | 0.91[ASN][1000 genomes] |
| rs1572179 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1577147 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs34360012 | 0.91[ASN][1000 genomes] |
| rs61681430 | 0.91[ASN][1000 genomes] |
| rs61961095 | 0.91[ASN][1000 genomes] |
| rs7990806 | 0.99[ASN][1000 genomes] |
| rs7993551 | 0.99[ASN][1000 genomes] |
| rs7995127 | 0.91[ASN][1000 genomes] |
| rs7995796 | 0.99[ASN][1000 genomes] |
| rs7998300 | 0.99[ASN][1000 genomes] |
| rs8000976 | 0.91[ASN][1000 genomes] |
| rs8002245 | 0.91[ASN][1000 genomes] |
| rs9284250 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9301377 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9521338 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9521339 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9583373 | 0.91[ASN][1000 genomes] |
| rs9587848 | 0.99[ASN][1000 genomes] |
| rs9587856 | 0.99[ASN][1000 genomes] |
| rs9587857 | 0.99[ASN][1000 genomes] |
| rs9587858 | 0.99[ASN][1000 genomes] |
| rs9587859 | 0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv870345 | chr13:89164439-89295782 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1051177 | chr13:89219432-89359036 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:89221600-89233000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
