Variant report

Variant	rs8000976
Chromosome Location	chr13:89227811-89227812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12583174	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1572179	0.89[ASN][1000 genomes]
rs1572180	0.91[ASN][1000 genomes]
rs1577147	0.99[ASN][1000 genomes]
rs17710699	0.91[CEU][hapmap];0.83[JPT][hapmap];0.85[YRI][hapmap]
rs17710747	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2347144	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34360012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4123698	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs41275072	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4397963	0.91[CEU][hapmap];0.83[JPT][hapmap]
rs56772332	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58284225	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61681430	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61960850	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61960851	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61960852	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61961095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318431	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7990806	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7993551	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7995127	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995796	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7998300	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8002245	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9284250	0.91[ASN][1000 genomes]
rs9301377	0.91[ASN][1000 genomes]
rs9521338	0.90[ASN][1000 genomes]
rs9521339	0.91[ASN][1000 genomes]
rs9583373	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9587848	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9587856	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9587857	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9587858	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9587859	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870345	chr13:89164439-89295782	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1051177	chr13:89219432-89359036	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900816	chr13:89224649-89392881	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv995491	chr13:89226895-89229609	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89221600-89233000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links