Variant report

Variant	rs61960852
Chromosome Location	chr13:89174903-89174904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12583174	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12584112	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17710747	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2347144	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34360012	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4123698	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41275072	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56772332	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58284225	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61681430	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61960848	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61960850	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61960851	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61961095	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7318431	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7990806	0.85[EUR][1000 genomes]
rs7993551	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7995127	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7995796	0.82[EUR][1000 genomes]
rs7998300	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8000976	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8002245	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9514903	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9520955	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9521035	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9583373	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9587848	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9587856	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9587857	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9587858	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9587859	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900810	chr13:88963676-89189142	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900814	chr13:89098616-89189142	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv900815	chr13:89098616-89216190	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv870345	chr13:89164439-89295782	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3392607	chr13:89174887-89175442	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89172800-89176600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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