Variant report

Variant	rs12584112
Chromosome Location	chr13:89159334-89159335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1011303	0.81[ASN][1000 genomes]
rs17710699	0.95[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap]
rs17710747	0.89[ASN][1000 genomes]
rs2347144	0.94[ASN][1000 genomes]
rs4123698	0.90[ASN][1000 genomes]
rs41275072	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4397963	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs56772332	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs58284225	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs61960848	0.88[ASN][1000 genomes]
rs61960850	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs61960851	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs61960852	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7318431	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9514903	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9520955	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9521035	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9587769	0.91[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900810	chr13:88963676-89189142	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900814	chr13:89098616-89189142	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv900815	chr13:89098616-89216190	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89158000-89162200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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