Variant report

Variant	rs1011303
Chromosome Location	chr13:89133514-89133515
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12584112	0.81[ASN][1000 genomes]
rs17710699	0.82[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap]
rs180285	0.92[ASN][1000 genomes]
rs338701	0.92[ASN][1000 genomes]
rs338704	0.92[ASN][1000 genomes]
rs338705	0.92[ASN][1000 genomes]
rs338707	0.92[ASN][1000 genomes]
rs432339	0.84[ASN][1000 genomes]
rs4397963	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs4772931	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61962073	0.84[ASN][1000 genomes]
rs9514903	0.80[ASN][1000 genomes]
rs9520955	0.81[ASN][1000 genomes]
rs9521035	0.80[ASN][1000 genomes]
rs9587769	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900809	chr13:88963676-89135721	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv900810	chr13:88963676-89189142	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900814	chr13:89098616-89189142	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv900815	chr13:89098616-89216190	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89133400-89134600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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