Variant report
| Variant | rs1573480 |
|---|---|
| Chromosome Location | chr4:106925361-106925362 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:106925210..106927104-chr4:106934407..106935960,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs1108247 | 0.99[ASN][1000 genomes] |
| rs13105287 | 0.81[EUR][1000 genomes] |
| rs13138279 | 0.84[EUR][1000 genomes] |
| rs13147201 | 0.81[EUR][1000 genomes] |
| rs13147392 | 0.81[EUR][1000 genomes] |
| rs13150451 | 0.80[EUR][1000 genomes] |
| rs13150647 | 0.83[EUR][1000 genomes] |
| rs17036476 | 0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17258724 | 0.91[EUR][1000 genomes] |
| rs1893717 | 0.81[EUR][1000 genomes] |
| rs1893719 | 0.81[EUR][1000 genomes] |
| rs1893720 | 0.80[EUR][1000 genomes] |
| rs2156508 | 0.81[EUR][1000 genomes] |
| rs34000647 | 0.81[EUR][1000 genomes] |
| rs34371905 | 0.81[EUR][1000 genomes] |
| rs35270545 | 0.90[EUR][1000 genomes] |
| rs35363492 | 0.81[EUR][1000 genomes] |
| rs4320139 | 0.80[EUR][1000 genomes] |
| rs4353911 | 0.82[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4585306 | 0.82[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4699208 | 0.99[ASN][1000 genomes] |
| rs6533231 | 0.81[EUR][1000 genomes] |
| rs6533232 | 0.81[EUR][1000 genomes] |
| rs6826176 | 0.85[EUR][1000 genomes] |
| rs7669422 | 0.81[EUR][1000 genomes] |
| rs7671109 | 0.81[EUR][1000 genomes] |
| rs7676845 | 0.81[EUR][1000 genomes] |
| rs7677290 | 0.81[EUR][1000 genomes] |
| rs7677840 | 0.84[ASN][1000 genomes] |
| rs7683941 | 0.81[EUR][1000 genomes] |
| rs7691229 | 0.81[EUR][1000 genomes] |
| rs7691244 | 0.81[EUR][1000 genomes] |
| rs7691395 | 0.80[EUR][1000 genomes] |
| rs7691403 | 0.80[EUR][1000 genomes] |
| rs7691953 | 0.80[EUR][1000 genomes] |
| rs869928 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014993 | chr4:106796019-106980727 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv522792 | chr4:106895964-106982793 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:106924200-106925600 | Enhancers | HepG2 | liver |
