Variant report

Variant	rs17036476
Chromosome Location	chr4:106922246-106922247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106915060..106916769-chr4:106919468..106922442,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1108247	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13105287	0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs13132677	0.81[EUR][1000 genomes]
rs13138279	0.86[EUR][1000 genomes]
rs13147201	0.84[EUR][1000 genomes]
rs13147392	0.84[EUR][1000 genomes]
rs13150451	0.84[EUR][1000 genomes]
rs13150647	0.87[EUR][1000 genomes]
rs13151138	0.83[EUR][1000 genomes]
rs1573480	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17258724	0.92[EUR][1000 genomes]
rs1893717	0.84[EUR][1000 genomes]
rs1893719	0.84[EUR][1000 genomes]
rs1893720	0.84[EUR][1000 genomes]
rs2156508	0.84[EUR][1000 genomes]
rs2156509	0.83[EUR][1000 genomes]
rs34000647	0.84[EUR][1000 genomes]
rs34371905	0.84[EUR][1000 genomes]
rs35270545	0.93[EUR][1000 genomes]
rs35363492	0.84[EUR][1000 genomes]
rs35436827	0.82[EUR][1000 genomes]
rs4320139	0.84[EUR][1000 genomes]
rs4353911	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4585306	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4699208	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6419173	0.83[EUR][1000 genomes]
rs6533231	0.84[EUR][1000 genomes]
rs6533232	0.83[EUR][1000 genomes]
rs66720770	0.83[EUR][1000 genomes]
rs6826176	0.87[EUR][1000 genomes]
rs7669422	0.84[EUR][1000 genomes]
rs7670195	0.81[EUR][1000 genomes]
rs7671109	0.84[EUR][1000 genomes]
rs7676845	0.84[EUR][1000 genomes]
rs7677290	0.84[EUR][1000 genomes]
rs7677840	0.85[ASN][1000 genomes]
rs7683941	0.84[EUR][1000 genomes]
rs7691229	0.84[EUR][1000 genomes]
rs7691244	0.84[EUR][1000 genomes]
rs7691395	0.84[EUR][1000 genomes]
rs7691403	0.84[EUR][1000 genomes]
rs7691953	0.84[EUR][1000 genomes]
rs869928	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17036476	CCL21	trans	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106907800-106925000	Weak transcription	Pancreas	Pancrea
2	chr4:106919800-106924200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:106921000-106924200	Weak transcription	HepG2	liver
4	chr4:106921200-106923600	Weak transcription	Fetal Kidney	kidney
5	chr4:106922200-106922600	Enhancers	Fetal Stomach	stomach
6	chr4:106922200-106923200	Enhancers	Colon Smooth Muscle	Colon

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