Variant report

Variant	rs1574477
Chromosome Location	chr3:112830021-112830022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10511318	0.97[ASN][1000 genomes]
rs16860599	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs1881941	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1881945	0.81[JPT][hapmap]
rs1920081	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs2895408	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73218150	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73220032	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9822730	0.81[CHD][hapmap]
rs9837076	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv877344	chr3:112789865-112854339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877345	chr3:112826253-112848851	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112808800-112832400	Weak transcription	Primary T cells from cord blood	blood
2	chr3:112819400-112830400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:112826000-112832200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:112827600-112830400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:112828000-112830200	Enhancers	Fetal Thymus	thymus
6	chr3:112828000-112830400	Enhancers	Fetal Muscle Leg	muscle
7	chr3:112828200-112836200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:112828800-112830200	Enhancers	Fetal Stomach	stomach
9	chr3:112829200-112830200	Enhancers	Colon Smooth Muscle	Colon
10	chr3:112829200-112831200	Enhancers	Hela-S3	cervix
11	chr3:112829400-112830400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr3:112829400-112830400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:112829400-112830400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:112829800-112830200	Enhancers	Primary T cells fromperipheralblood	blood
15	chr3:112829800-112830200	Enhancers	Placenta Amnion	Placenta Amnion
16	chr3:112829800-112830400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:112829800-112830400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:112829800-112830400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr3:112829800-112830400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:112829800-112830400	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr3:112829800-112830600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:112829800-112830600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:112829800-112830600	Enhancers	HMEC	breast
24	chr3:112830000-112830400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr3:112830000-112830400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:112830000-112830400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:112830000-112830800	Enhancers	NHEK	skin
28	chr3:112830000-112835200	Weak transcription	Fetal Muscle Trunk	muscle

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