Variant report

Variant	rs1881941
Chromosome Location	chr3:112852476-112852477
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10511318	0.83[ASN][1000 genomes]
rs1574477	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16860564	0.81[ASN][1000 genomes]
rs16860599	0.82[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1881945	0.91[CHB][hapmap];0.93[JPT][hapmap];0.95[YRI][hapmap];0.89[ASN][1000 genomes]
rs1920079	0.87[ASN][1000 genomes]
rs1920081	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28671320	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2895408	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62264167	0.81[ASN][1000 genomes]
rs73218150	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73220032	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73223921	0.83[ASN][1000 genomes]
rs7619876	0.81[ASN][1000 genomes]
rs9822730	0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[LWK][hapmap];0.82[MKK][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9824380	0.81[ASN][1000 genomes]
rs9837076	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv877344	chr3:112789865-112854339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112847800-112866800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:112849400-112865200	Weak transcription	Fetal Stomach	stomach
3	chr3:112849800-112854800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:112851600-112853000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:112851800-112852800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:112851800-112852800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:112851800-112852800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr3:112851800-112854800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:112852200-112854200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:112852200-112854800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:112852400-112854200	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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