Variant report

Variant	rs1576543
Chromosome Location	chr13:85019805-85019806
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12874071	0.89[ASN][1000 genomes]
rs1888242	0.89[ASN][1000 genomes]
rs9531584	0.85[ASN][1000 genomes]
rs9531585	0.89[ASN][1000 genomes]
rs9546669	0.82[ASN][1000 genomes]
rs9546673	0.85[ASN][1000 genomes]
rs9546674	0.85[ASN][1000 genomes]
rs9546678	0.85[ASN][1000 genomes]
rs9546683	0.89[ASN][1000 genomes]
rs9546686	0.89[ASN][1000 genomes]
rs9546687	0.89[ASN][1000 genomes]
rs9546688	0.89[ASN][1000 genomes]
rs9546690	0.89[ASN][1000 genomes]
rs9575567	0.82[ASN][1000 genomes]
rs9602472	0.82[ASN][1000 genomes]
rs960832	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832665	chr13:84848087-85041311	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv900690	chr13:84877516-85052477	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2754893	chr13:84931199-85055599	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv456046	chr13:84971270-85262508	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv562561	chr13:84971270-85262508	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85018800-85022000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr13:85019000-85022000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr13:85019400-85020200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:85019400-85022200	Enhancers	HMEC	breast
5	chr13:85019600-85020000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr13:85019600-85020400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr13:85019600-85021000	Enhancers	HSMM	muscle
8	chr13:85019600-85021200	Enhancers	Osteobl	bone
9	chr13:85019600-85021800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:85019800-85020000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr13:85019800-85020600	Flanking Active TSS	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links