Variant report

Variant	rs1577661
Chromosome Location	chr10:89869551-89869552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89868617..89870229-chr10:89891624..89893252,2	K562	blood:
2	chr10:89620141..89628673-chr10:89867993..89880509,31	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12411862	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932530	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932531	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932532	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4934378	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4934379	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59204786	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60034915	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89864600-89875400	Weak transcription	Aorta	Aorta
2	chr10:89865800-89870200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:89867800-89873200	Weak transcription	Spleen	Spleen
4	chr10:89867800-89873800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:89868000-89872800	Weak transcription	Adipose Nuclei	Adipose
6	chr10:89868000-89873800	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:89868200-89870200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:89868200-89871400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr10:89868200-89873600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr10:89868200-89876200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr10:89868400-89870000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:89868400-89870200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:89868400-89870200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:89868400-89870200	Weak transcription	HSMM	muscle
15	chr10:89868400-89872400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:89868400-89872800	Weak transcription	Primary T cells from cord blood	blood
17	chr10:89868400-89872800	Weak transcription	Thymus	Thymus
18	chr10:89868400-89873200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr10:89868400-89873200	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr10:89868400-89873200	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr10:89868400-89873200	Weak transcription	Left Ventricle	heart
22	chr10:89868400-89873600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr10:89868400-89873600	Weak transcription	Psoas Muscle	Psoas
24	chr10:89868400-89874000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr10:89868400-89876800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr10:89868600-89872600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:89868600-89872800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:89868800-89872200	Weak transcription	Fetal Thymus	thymus
29	chr10:89868800-89872600	Weak transcription	Primary hematopoietic stem cells	blood
30	chr10:89869000-89870000	Weak transcription	Primary B cells from cord blood	blood
31	chr10:89869000-89870200	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr10:89869000-89870600	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr10:89869000-89872600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr10:89869200-89869600	Weak transcription	Primary B cells from peripheral blood	blood
35	chr10:89869200-89873200	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr10:89869400-89870200	ZNF genes & repeats	GM12878-XiMat	blood
37	chr10:89869400-89871800	Weak transcription	Dnd41	blood

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