Variant report

Variant	rs4934378
Chromosome Location	chr10:89867693-89867694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89866297..89867797-chr15:100017293..100020149,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000068305	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10749564	0.96[ASN][1000 genomes]
rs12411862	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1577661	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1932530	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1932531	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1932532	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4147056	0.93[ASN][1000 genomes]
rs4934379	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59204786	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7079754	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89861600-89868000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:89863200-89869000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:89863800-89869200	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:89864600-89875400	Weak transcription	Aorta	Aorta
5	chr10:89865000-89869000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr10:89865600-89868600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:89865800-89868600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr10:89865800-89868800	Enhancers	Primary hematopoietic stem cells	blood
9	chr10:89865800-89870200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:89866400-89868400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:89866400-89868800	Enhancers	Fetal Thymus	thymus
12	chr10:89866600-89868600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:89866800-89869000	Enhancers	Primary B cells from cord blood	blood
14	chr10:89867400-89867800	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr10:89867400-89868000	Enhancers	Adipose Nuclei	Adipose
16	chr10:89867400-89868200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr10:89867400-89869400	Enhancers	Dnd41	blood
18	chr10:89867400-89869400	Flanking Active TSS	GM12878-XiMat	blood
19	chr10:89867600-89867800	Enhancers	Brain Hippocampus Middle	brain
20	chr10:89867600-89867800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr10:89867600-89867800	Enhancers	Spleen	Spleen
22	chr10:89867600-89868000	Enhancers	Fetal Muscle Leg	muscle
23	chr10:89867600-89868200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr10:89867600-89868400	Enhancers	Primary T cells from cord blood	blood
25	chr10:89867600-89868400	Enhancers	Primary T cells fromperipheralblood	blood
26	chr10:89867600-89868400	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr10:89867600-89868400	Enhancers	Left Ventricle	heart
28	chr10:89867600-89868400	Enhancers	Psoas Muscle	Psoas
29	chr10:89867600-89868400	Enhancers	Thymus	Thymus

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