Variant report

Variant	rs1579725
Chromosome Location	chr7:62377714-62377715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 206 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10237010	0.84[AMR][1000 genomes]
rs10238453	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10247897	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10252719	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10253340	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10262119	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10275207	0.80[AMR][1000 genomes]
rs10807696	0.83[AMR][1000 genomes]
rs1117004	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12386720	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12540760	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1822119	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1837663	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1837666	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1837673	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1899240	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1899245	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1946929	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1946930	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2083552	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2099785	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2119448	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2196989	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2196992	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2196995	0.80[AMR][1000 genomes]
rs2196998	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2218216	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2311510	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2311511	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2311557	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34641005	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35229200	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4130890	0.80[AMR][1000 genomes]
rs4304222	0.81[AMR][1000 genomes]
rs4361662	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4365977	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4373418	0.80[AMR][1000 genomes]
rs4418233	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4421250	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4440520	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4484570	0.80[AMR][1000 genomes]
rs4521651	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4527769	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4532486	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4538765	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4552787	0.80[AMR][1000 genomes]
rs4574718	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4594999	0.80[AMR][1000 genomes]
rs4717303	0.89[EUR][1000 genomes]
rs4717304	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4718283	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4718318	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4718336	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4718474	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6964779	0.81[AMR][1000 genomes]
rs7293549	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7293553	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7293636	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7293653	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7293659	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7811648	0.81[AMR][1000 genomes]
rs8185622	0.80[AMR][1000 genomes]
rs8188345	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8188346	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8188354	0.80[AMR][1000 genomes]
rs8188439	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8188471	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8188505	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:138 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915748	chr7:61831844-62508277	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1033346	chr7:61832045-62404706	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1017338	chr7:61840313-62393418	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv888169	chr7:61843595-62413547	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1016125	chr7:61846306-62404706	ZNF genes & repeats Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1030517	chr7:61846306-62412250	Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1029383	chr7:61846306-62453841	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1025033	chr7:61850281-62393418	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv1030472	chr7:61850281-62404706	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv888173	chr7:61852895-62461798	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv1031217	chr7:61857933-62447335	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv1024595	chr7:61875418-62385418	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	nsv1018668	chr7:61875418-62385603	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv1022245	chr7:61875418-62453346	Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers Strong transcription	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv1027594	chr7:61875418-62706404	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
16	esv1805529	chr7:61876147-62467017	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
17	esv2422387	chr7:61887817-62700377	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
18	esv2422384	chr7:61897415-62597315	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
19	nsv607170	chr7:61968118-62404706	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
20	esv11482	chr7:61971046-62633019	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
21	nsv888183	chr7:61973259-62461798	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv888184	chr7:61973259-62598151	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
23	nsv888185	chr7:61973259-62735470	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
24	nsv888186	chr7:61973259-62759456	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
25	nsv888187	chr7:61976744-62881775	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
26	esv1811336	chr7:61978766-62641533	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
27	nsv607235	chr7:61984769-62402795	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	nsv607236	chr7:61984769-62450075	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
29	nsv607237	chr7:61984769-62535226	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
30	nsv1028183	chr7:61987161-62439281	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
31	nsv1023320	chr7:61987161-62508333	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
32	nsv1015403	chr7:61987161-62509537	Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
33	nsv1021114	chr7:61987161-62665592	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
34	nsv1034982	chr7:61987161-62706404	ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
35	nsv1026246	chr7:61987161-62984310	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
36	nsv888194	chr7:62001639-62413547	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
37	esv1811622	chr7:62005734-62422373	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
38	nsv470244	chr7:62012220-62838532	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
39	nsv516283	chr7:62012221-62705018	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
40	nsv818509	chr7:62012221-62735470	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
41	nsv1016476	chr7:62014313-62385603	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
42	nsv1015917	chr7:62014313-62503015	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
43	nsv1033641	chr7:62014313-62609153	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
44	nsv1028799	chr7:62014313-62693231	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
45	nsv1025454	chr7:62014313-62720204	Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
46	nsv1033292	chr7:62014313-62752689	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
47	nsv1025302	chr7:62020156-62404706	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
48	nsv1029240	chr7:62020156-62706404	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
49	esv3496310	chr7:62025175-62400790	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
50	esv3496311	chr7:62025175-62400790	Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:62374400-62383200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:62375200-62387400	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr7:62377400-62379200	ZNF genes & repeats	Psoas Muscle	Psoas

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