Variant report

Variant	rs1579855
Chromosome Location	chr2:150937117-150937118
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13412014	0.95[ASN][1000 genomes]
rs1554180	0.83[ASN][1000 genomes]
rs1878098	0.83[ASN][1000 genomes]
rs73002443	0.95[ASN][1000 genomes]
rs953811	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005441	chr2:150457624-151060247	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	nsv875285	chr2:150904671-150985765	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv469524	chr2:150927500-151076920	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:150933200-150938400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:150933200-150938600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:150933400-150937200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:150933400-150937200	Weak transcription	HSMM	muscle
5	chr2:150933400-150938200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:150933400-150938400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:150935800-150937400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr2:150936200-150939800	Enhancers	HUVEC	blood vessel
9	chr2:150936400-150937200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:150936800-150937200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:150937000-150937400	Enhancers	NH-A	brain
12	chr2:150937000-150937400	Enhancers	Osteobl	bone
13	chr2:150937000-150937600	Enhancers	NHDF-Ad	bronchial
14	chr2:150937000-150937800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr2:150937000-150938800	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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