Variant report

Variant	rs1878098
Chromosome Location	chr2:150919246-150919247
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:150914715..150917504-chr2:150918623..150921614,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13412014	0.88[ASN][1000 genomes]
rs1554180	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1579855	0.83[ASN][1000 genomes]
rs73002443	0.88[ASN][1000 genomes]
rs953811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005441	chr2:150457624-151060247	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	nsv875285	chr2:150904671-150985765	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:150915600-150919800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:150915800-150919600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:150915800-150922600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:150916000-150921200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:150917400-150920000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr2:150917400-150920400	Weak transcription	Brain Substantia Nigra	brain
7	chr2:150917400-150920600	Weak transcription	Brain Hippocampus Middle	brain
8	chr2:150917600-150919600	Weak transcription	Brain Germinal Matrix	brain
9	chr2:150917600-150919800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr2:150917600-150919800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:150917600-150919800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr2:150917600-150920000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr2:150917600-150920200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr2:150917600-150920200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr2:150917600-150920200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:150917600-150920200	Weak transcription	Brain Angular Gyrus	brain
17	chr2:150917600-150920600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr2:150918600-150920800	Enhancers	Adipose Nuclei	Adipose
19	chr2:150918600-150921000	Enhancers	Fetal Muscle Leg	muscle
20	chr2:150918800-150919600	Enhancers	Colon Smooth Muscle	Colon
21	chr2:150918800-150919600	Flanking Active TSS	HSMMtube	muscle
22	chr2:150918800-150920000	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr2:150918800-150920400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr2:150918800-150920600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr2:150918800-150920800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr2:150918800-150921000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr2:150918800-150921000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr2:150918800-150921200	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr2:150918800-150921200	Enhancers	NHDF-Ad	bronchial
30	chr2:150918800-150922200	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr2:150919000-150919400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr2:150919000-150919800	Weak transcription	Fetal Brain Female	brain
33	chr2:150919000-150921000	Enhancers	HMEC	breast
34	chr2:150919000-150921000	Enhancers	HSMM	muscle
35	chr2:150919000-150921000	Enhancers	NHEK	skin
36	chr2:150919000-150921200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr2:150919000-150921400	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr2:150919200-150919400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr2:150919200-150919600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr2:150919200-150919600	Weak transcription	Fetal Muscle Trunk	muscle
41	chr2:150919200-150920200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr2:150919200-150920200	Weak transcription	Stomach Smooth Muscle	stomach
43	chr2:150919200-150920800	Enhancers	Osteobl	bone
44	chr2:150919200-150921400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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