Variant report

Variant	rs1581815
Chromosome Location	chr14:41192079-41192080
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10140267	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625185	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11625394	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11626835	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12879007	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12880627	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12881491	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12883178	0.93[EUR][1000 genomes]
rs12889679	0.85[ASN][1000 genomes]
rs12890359	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12890462	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12890788	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12890979	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12891606	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1349123	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2152418	0.87[ASN][1000 genomes]
rs34033480	0.93[EUR][1000 genomes]
rs34301575	0.93[EUR][1000 genomes]
rs34668164	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34672081	0.88[EUR][1000 genomes]
rs34846432	0.93[EUR][1000 genomes]
rs34883931	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35288519	0.93[EUR][1000 genomes]
rs35610405	0.87[EUR][1000 genomes]
rs36104275	0.93[EUR][1000 genomes]
rs4144159	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67005703	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71409951	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7157852	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72621011	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72621012	0.92[ASN][1000 genomes]
rs72621013	0.92[ASN][1000 genomes]
rs72621014	0.92[ASN][1000 genomes]
rs72621016	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901664	chr14:40663978-41432350	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv901669	chr14:40832004-41432350	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv564463	chr14:40931087-41207433	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1054806	chr14:40936163-41211004	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1041122	chr14:40956143-41869421	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv564464	chr14:40957542-41871875	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv1044695	chr14:40959813-41234793	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv542051	chr14:40959813-41234793	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv534448	chr14:40960013-41634431	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv994955	chr14:41018728-41234652	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1046784	chr14:41081450-41225537	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv901684	chr14:41082183-41277956	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv1041446	chr14:41089513-41282762	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv542052	chr14:41089513-41282762	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv1052990	chr14:41089513-41575560	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv901687	chr14:41097663-41194262	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	nsv901688	chr14:41097663-41277956	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	nsv901689	chr14:41097663-41296578	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	nsv901690	chr14:41102907-41232118	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	nsv901691	chr14:41102907-41249954	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	nsv901692	chr14:41107712-41277956	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	nsv1054631	chr14:41120485-41389845	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	nsv1054478	chr14:41157794-41219377	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv974275	chr14:41173852-41204734	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:41190800-41195600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:41191400-41192200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

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