Variant report

Variant	rs1583283
Chromosome Location	chr5:147627350-147627351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147622798..147625468-chr5:147626168..147628651,2	MCF-7	breast:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10037138	0.93[EUR][1000 genomes]
rs10038416	0.84[EUR][1000 genomes]
rs10042764	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10045567	0.91[EUR][1000 genomes]
rs10055415	0.93[EUR][1000 genomes]
rs10058023	0.93[EUR][1000 genomes]
rs10067624	0.93[EUR][1000 genomes]
rs10071354	0.93[EUR][1000 genomes]
rs10075545	0.86[EUR][1000 genomes]
rs10078359	0.91[EUR][1000 genomes]
rs10079716	0.80[ASN][1000 genomes]
rs1023714	0.93[EUR][1000 genomes]
rs10463281	0.93[EUR][1000 genomes]
rs10463282	0.98[EUR][1000 genomes]
rs10463404	0.93[EUR][1000 genomes]
rs10463405	0.93[EUR][1000 genomes]
rs10477364	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10477366	0.93[EUR][1000 genomes]
rs11168042	0.83[EUR][1000 genomes]
rs1119451	0.83[EUR][1000 genomes]
rs1120564	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1124209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1158938	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1158939	0.93[EUR][1000 genomes]
rs1158940	0.93[EUR][1000 genomes]
rs1159203	0.83[EUR][1000 genomes]
rs1159204	0.93[EUR][1000 genomes]
rs1159205	0.93[EUR][1000 genomes]
rs12332436	0.80[ASN][1000 genomes]
rs12332677	0.80[ASN][1000 genomes]
rs12516071	0.93[EUR][1000 genomes]
rs12517179	0.86[EUR][1000 genomes]
rs12653739	0.93[EUR][1000 genomes]
rs12654024	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13152992	0.93[EUR][1000 genomes]
rs13155371	0.93[EUR][1000 genomes]
rs13178303	0.93[EUR][1000 genomes]
rs13179719	0.98[EUR][1000 genomes]
rs1368304	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1368307	0.93[EUR][1000 genomes]
rs1368308	0.93[EUR][1000 genomes]
rs1368309	0.93[EUR][1000 genomes]
rs1368310	0.93[EUR][1000 genomes]
rs1368311	0.87[EUR][1000 genomes]
rs1368313	0.89[EUR][1000 genomes]
rs1368314	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432693	0.86[EUR][1000 genomes]
rs1432694	0.93[EUR][1000 genomes]
rs1432695	0.93[EUR][1000 genomes]
rs1432696	0.91[EUR][1000 genomes]
rs1432697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432698	0.89[EUR][1000 genomes]
rs1432699	0.93[EUR][1000 genomes]
rs1432700	0.91[EUR][1000 genomes]
rs1432701	0.98[EUR][1000 genomes]
rs1432702	0.93[EUR][1000 genomes]
rs1583279	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1583280	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1583281	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1583282	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1583284	0.93[EUR][1000 genomes]
rs1594647	0.83[EUR][1000 genomes]
rs17107992	0.83[EUR][1000 genomes]
rs1897534	0.98[EUR][1000 genomes]
rs2082389	0.93[EUR][1000 genomes]
rs2400500	0.93[EUR][1000 genomes]
rs2400502	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2400503	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2895730	0.93[EUR][1000 genomes]
rs2915793	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2915794	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2963725	0.85[EUR][1000 genomes]
rs2963727	0.93[EUR][1000 genomes]
rs2963728	0.96[EUR][1000 genomes]
rs4470757	0.98[EUR][1000 genomes]
rs4532356	0.93[EUR][1000 genomes]
rs4705237	0.83[EUR][1000 genomes]
rs4705239	0.93[EUR][1000 genomes]
rs62388553	0.83[ASN][1000 genomes]
rs6580537	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6580538	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6876753	0.86[EUR][1000 genomes]
rs6893320	0.83[EUR][1000 genomes]
rs7715043	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7715343	0.93[EUR][1000 genomes]
rs7724807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726415	0.98[EUR][1000 genomes]
rs7732168	0.93[EUR][1000 genomes]
rs9325089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9325090	0.93[EUR][1000 genomes]
rs9325091	0.93[EUR][1000 genomes]
rs9325092	0.93[EUR][1000 genomes]
rs986673	0.86[EUR][1000 genomes]
rs9885303	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147618800-147647600	Weak transcription	Hela-S3	cervix

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