Variant report

Variant	rs2915794
Chromosome Location	chr5:147630841-147630842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10037138	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10038416	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10042764	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10045567	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs10055415	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10058023	0.98[EUR][1000 genomes]
rs10067624	0.98[EUR][1000 genomes]
rs10071354	0.98[EUR][1000 genomes]
rs10075545	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10078359	0.96[EUR][1000 genomes]
rs10079716	0.80[ASN][1000 genomes]
rs1023714	0.98[EUR][1000 genomes]
rs10463281	0.98[EUR][1000 genomes]
rs10463282	0.93[EUR][1000 genomes]
rs10463404	0.98[EUR][1000 genomes]
rs10463405	0.98[EUR][1000 genomes]
rs10477364	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10477366	0.98[EUR][1000 genomes]
rs11168042	0.88[EUR][1000 genomes]
rs1119451	0.88[EUR][1000 genomes]
rs1120564	0.86[ASN][1000 genomes]
rs1124209	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1158938	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1158939	0.98[EUR][1000 genomes]
rs1158940	0.98[EUR][1000 genomes]
rs1159203	0.88[EUR][1000 genomes]
rs1159204	0.98[EUR][1000 genomes]
rs1159205	0.98[EUR][1000 genomes]
rs11741093	1.00[CEU][hapmap]
rs12186491	0.85[CEU][hapmap]
rs12332436	0.80[ASN][1000 genomes]
rs12332677	0.80[ASN][1000 genomes]
rs12516071	0.98[EUR][1000 genomes]
rs12517179	0.87[EUR][1000 genomes]
rs12653739	0.95[EUR][1000 genomes]
rs12654024	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13152992	0.98[EUR][1000 genomes]
rs13155371	0.98[EUR][1000 genomes]
rs13178303	0.98[EUR][1000 genomes]
rs13179719	0.93[EUR][1000 genomes]
rs1368304	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1368307	0.98[EUR][1000 genomes]
rs1368308	0.98[EUR][1000 genomes]
rs1368309	0.98[EUR][1000 genomes]
rs1368310	0.98[EUR][1000 genomes]
rs1368311	0.93[EUR][1000 genomes]
rs1368313	0.95[EUR][1000 genomes]
rs1368314	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432688	1.00[CEU][hapmap]
rs1432693	0.87[EUR][1000 genomes]
rs1432694	0.98[EUR][1000 genomes]
rs1432695	0.98[EUR][1000 genomes]
rs1432696	0.96[EUR][1000 genomes]
rs1432697	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432698	0.95[EUR][1000 genomes]
rs1432699	0.98[EUR][1000 genomes]
rs1432700	0.96[EUR][1000 genomes]
rs1432701	0.93[EUR][1000 genomes]
rs1432702	0.98[EUR][1000 genomes]
rs1432703	0.82[EUR][1000 genomes]
rs1583279	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1583280	0.93[ASN][1000 genomes]
rs1583281	0.93[ASN][1000 genomes]
rs1583282	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1583283	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1583284	0.98[EUR][1000 genomes]
rs1594647	0.88[EUR][1000 genomes]
rs17107992	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1897534	0.93[EUR][1000 genomes]
rs2082389	0.98[EUR][1000 genomes]
rs2400500	0.98[EUR][1000 genomes]
rs2400502	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2400503	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2895730	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2915793	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2963725	0.90[EUR][1000 genomes]
rs2963727	0.98[EUR][1000 genomes]
rs2963728	0.91[EUR][1000 genomes]
rs4470757	0.93[EUR][1000 genomes]
rs4532356	0.98[EUR][1000 genomes]
rs4705237	0.88[EUR][1000 genomes]
rs4705239	0.98[EUR][1000 genomes]
rs62388553	0.83[ASN][1000 genomes]
rs6580537	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6580538	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6876753	0.87[EUR][1000 genomes]
rs6893320	0.85[EUR][1000 genomes]
rs7715043	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7715343	0.98[EUR][1000 genomes]
rs7724807	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726415	0.93[EUR][1000 genomes]
rs7732168	0.98[EUR][1000 genomes]
rs9325089	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9325090	0.98[EUR][1000 genomes]
rs9325091	0.98[EUR][1000 genomes]
rs9325092	0.98[EUR][1000 genomes]
rs986673	0.87[EUR][1000 genomes]
rs9885303	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147618800-147647600	Weak transcription	Hela-S3	cervix
2	chr5:147630800-147631200	Active TSS	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links