Variant report

Variant	rs158508
Chromosome Location	chr9:93534587-93534588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10993700	0.86[ASN][1000 genomes]
rs1172987	0.94[EUR][1000 genomes]
rs1172988	0.94[EUR][1000 genomes]
rs1172989	0.94[EUR][1000 genomes]
rs167079	0.96[EUR][1000 genomes]
rs1755958	1.00[CHB][hapmap]
rs1760124	1.00[CHB][hapmap]
rs2035072	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs209424	0.96[EUR][1000 genomes]
rs209971	0.96[EUR][1000 genomes]
rs2613310	1.00[CHB][hapmap]
rs2613320	1.00[CHB][hapmap]
rs290213	1.00[CHB][hapmap]
rs290225	1.00[CHB][hapmap]
rs290232	1.00[CHB][hapmap]
rs290234	1.00[CHB][hapmap]
rs290235	1.00[CHB][hapmap]
rs290236	1.00[CHB][hapmap]
rs290237	1.00[CHB][hapmap]
rs290238	1.00[CHB][hapmap]
rs290256	1.00[CHB][hapmap]
rs290261	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs290262	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs290264	0.96[EUR][1000 genomes]
rs290272	0.96[EUR][1000 genomes]
rs290273	0.96[EUR][1000 genomes]
rs290277	0.96[EUR][1000 genomes]
rs291002	0.96[EUR][1000 genomes]
rs291004	0.96[EUR][1000 genomes]
rs291007	0.96[EUR][1000 genomes]
rs965892	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv482757	chr9:93356095-93543903	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv893567	chr9:93519280-93609668	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93529600-93536200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr9:93530600-93538400	Enhancers	Primary B cells from peripheral blood	blood
3	chr9:93530800-93538200	Enhancers	Primary B cells from cord blood	blood
4	chr9:93531600-93537600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:93532200-93537400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr9:93532400-93538200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr9:93533600-93535600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:93533600-93535800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:93533800-93534800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr9:93533800-93535000	Weak transcription	GM12878-XiMat	blood
11	chr9:93534200-93534600	Weak transcription	Spleen	Spleen
12	chr9:93534200-93535400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr9:93534400-93535200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links