Variant report

Variant	rs1586561
Chromosome Location	chr3:111111517-111111518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12695238	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12695239	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1489037	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1529055	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1529061	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1529064	0.89[EUR][1000 genomes]
rs2634536	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2646970	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2646991	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2646992	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2698334	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2698335	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2698336	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2932043	0.89[EUR][1000 genomes]
rs2950985	0.89[EUR][1000 genomes]
rs4682040	0.89[EUR][1000 genomes]
rs4682041	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72946117	0.89[EUR][1000 genomes]
rs973209	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111110400-111112200	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr3:111110800-111112200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:111110800-111112200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr3:111111000-111112000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr3:111111000-111112200	Enhancers	Primary T cells from cord blood	blood
6	chr3:111111000-111112200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr3:111111000-111112200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:111111000-111112200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr3:111111000-111112200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr3:111111000-111112200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr3:111111000-111112400	ZNF genes & repeats	Dnd41	blood
12	chr3:111111000-111112800	Enhancers	HMEC	breast
13	chr3:111111000-111113200	Enhancers	Hela-S3	cervix
14	chr3:111111400-111112200	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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