Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12695238	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12695239	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1489037	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1529055	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1529061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1529064	1.00[EUR][1000 genomes]
rs1586561	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2634536	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2646991	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2646992	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2698334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2698335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2698336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2932043	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2950985	1.00[EUR][1000 genomes]
rs2958073	0.90[AMR][1000 genomes]
rs4682040	1.00[EUR][1000 genomes]
rs4682041	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72946117	1.00[EUR][1000 genomes]
rs973209	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111136800-111137600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:111136800-111137600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:111137000-111137600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:111137000-111137600	Enhancers	Primary B cells from peripheral blood	blood
5	chr3:111137000-111137800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:111137200-111137600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:111137200-111137600	Enhancers	HUES64 Cell Line	embryonic stem cell

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