Variant report

Variant	rs1586623
Chromosome Location	chr2:10815150-10815151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10178212	0.80[ASN][1000 genomes]
rs10178247	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11695330	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13005359	0.86[ASN][1000 genomes]
rs1586622	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17364547	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17364568	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2110775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357654	0.81[ASN][1000 genomes]
rs2357656	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4233884	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4586606	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4614910	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4669605	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4669606	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4669607	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55674834	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58445061	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6715461	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6725354	0.82[ASN][1000 genomes]
rs72777324	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72777328	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72777332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72777335	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7572631	0.81[ASN][1000 genomes]
rs7593172	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs759398	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9798203	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000953	chr2:10717304-10921805	Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535584	chr2:10717304-10921805	Bivalent Enhancer Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv833381	chr2:10723465-10911284	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1000731	chr2:10758657-10943882	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10756200-10828400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:10788000-10827400	Weak transcription	Fetal Brain Male	brain
3	chr2:10788400-10828000	Weak transcription	Fetal Heart	heart
4	chr2:10789000-10820600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:10793800-10828000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:10794000-10823600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:10794200-10817200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr2:10794600-10828200	Weak transcription	Stomach Mucosa	stomach
9	chr2:10794600-10828400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr2:10795200-10828800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr2:10797400-10823600	Weak transcription	Psoas Muscle	Psoas
12	chr2:10799200-10815400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr2:10799200-10826000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:10799400-10823200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr2:10799800-10823200	Weak transcription	Colonic Mucosa	Colon
16	chr2:10800200-10829200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr2:10802400-10828200	Weak transcription	Brain Germinal Matrix	brain
18	chr2:10802800-10815400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr2:10802800-10823400	Weak transcription	Brain Hippocampus Middle	brain
20	chr2:10803600-10828600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr2:10805000-10822800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr2:10805000-10823600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr2:10805000-10829200	Weak transcription	Aorta	Aorta
24	chr2:10806200-10821400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr2:10806200-10828200	Weak transcription	Brain Substantia Nigra	brain
26	chr2:10806600-10823600	Weak transcription	Ovary	ovary
27	chr2:10806800-10822200	Weak transcription	Thymus	Thymus
28	chr2:10807400-10821600	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr2:10807600-10828000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr2:10807800-10815800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr2:10807800-10821400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr2:10808200-10820600	Weak transcription	Brain Anterior Caudate	brain
33	chr2:10808200-10820600	Weak transcription	Fetal Brain Female	brain
34	chr2:10808200-10828000	Weak transcription	Gastric	stomach
35	chr2:10808200-10828400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr2:10808400-10820400	Weak transcription	Fetal Lung	lung
37	chr2:10808400-10820400	Weak transcription	HSMM	muscle
38	chr2:10808400-10820800	Weak transcription	Brain Angular Gyrus	brain
39	chr2:10808400-10820800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr2:10808400-10820800	Weak transcription	NHDF-Ad	bronchial
41	chr2:10808400-10821000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr2:10808400-10828000	Weak transcription	NHLF	lung
43	chr2:10808600-10815600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr2:10809400-10816000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr2:10810000-10815400	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr2:10810200-10826600	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr2:10810400-10815800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr2:10810400-10824800	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr2:10810800-10815200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr2:10811200-10816200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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